PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04233.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 207aa    MW: 22881.7 Da    PI: 4.798
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04233.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-183383155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  KHN04233.1 33 PVYHGVRKRN-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALTIKG 83
                68*****887.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-123383IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-313492IPR001471AP2/ERF domain
SMARTSM003801.5E-333497IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-213491IPR016177DNA-binding domain
PROSITE profilePS5103222.8663491IPR001471AP2/ERF domain
CDDcd000186.28E-323592No hitNo description
PRINTSPR003677.1E-103546IPR001471AP2/ERF domain
PRINTSPR003677.1E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTQQTTTSSS SHSGPRAQAQ KQSKRPRDCS KHPVYHGVRK RNWGKWVSEI REPRKKSRIW  60
LGTFSTPEMA ARAHDVAALT IKGQSAILNF PEIADLLPRP VTCSPRDIQT AATAAASMVK  120
FDPVTQSSDS ETPESSELSE IVELPNIEDS SVDSTQEFVL VDVVDSWVFP PMGMGSEGIE  180
FCAAFSDELF PQQSFIGSEI EILPIWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1930961077Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310810.0KT031081.1 Glycine max clone HN_CCL_165 AP2-EREBP transcription factor (Glyma08g21650.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028238904.11e-152dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD34e-59DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0B2P9881e-150A0A0B2P988_GLYSO; Dehydration-responsive element-binding protein 3
STRINGGLYMA07G02001.11e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]