PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN04448.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 168aa MW: 18195 Da PI: 8.2267

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN04448.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.2	2.1e-27	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C l+ + p++q++++ +++k+FG+s ++ +++++p ++r+++++sl++eA+ r+ +Pv+Gavg++l+++++++q+++++ KHN04448.1 2 SCNGCRVLRKRCSERCSLRSSLnwidcPHAQAHATLFLAKFFGRSDLMFFISSVPLNNRPALFQSLLFEACGRTVNPVNGAVGLLLSGNWHVCQAAVHT 100 6**********************************************************************************************9987 PP DUF260 95 all 97 +l+ KHN04448.1 101 VLA 103 765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.908	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-23	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MSCNGCRVLR KRCSERCSLR SSLNWIDCPH AQAHATLFLA KFFGRSDLMF FISSVPLNNR 60 PALFQSLLFE ACGRTVNPVN GAVGLLLSGN WHVCQAAVHT VLAGGVLRPL SEVVAPSESM 120 FSHQFQSLAS DSLKRSSDAT APVMSTMVSG ESEICSSDDG KKLLNLFV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	135	DSLKRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN04448.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001340895.1	1e-120	LBD domain-containing transcription factor
Refseq	XP_028227721.1	1e-120	LOB domain-containing protein 39-like
Swissprot	Q9SZE8	4e-55	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A0R0K3S6	1e-119	A0A0R0K3S6_SOYBN; Uncharacterized protein
TrEMBL	A0A445KVY6	1e-119	A0A445KVY6_GLYSO; LOB domain-containing protein 39
STRING	GLYMA04G04750.1	1e-110	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	2e-48	LOB domain-containing protein 39