PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN04484.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WOX

Protein Properties

Length: 224aa MW: 25896.4 Da PI: 9.6674

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN04484.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.7	3.2e-21	84	143	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++ +l +++ ++V++WFqN++a+e++ KHN04484.1 84 TRWNPTQEQIGILEMLYKGgMRTPNAQQIEQITVQLgkygKIEGKNVFYWFQNHKARERQ 143 7***************99************************************97 PP
2	Wus_type_Homeobox	117.2	7.3e-38	84	145	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+lyk G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqkq KHN04484.1 84 TRWNPTQEQIGILEMLYKGGMRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQ 145 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.009	79	144	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-13	80	150	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-7	81	148	IPR001356	Homeobox domain
CDD	cd00086	3.88E-5	84	145	No hit	No description
Pfam	PF00046	6.7E-19	84	143	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.6E-8	85	143	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MGSMKVHQFT RGLIWEHEPF LTLGCKRLRP LAPKLPNTKT ITTPFDLKSF IRPESGPRKP 60 VSSDDTKKDP PSPQGQIETH PGGTRWNPTQ EQIGILEMLY KGGMRTPNAQ QIEQITVQLG 120 KYGKIEGKNV FYWFQNHKAR ERQKQKRSSL ASSHSPRTPT IHSVVTLETT RGEVVERDHE 180 EDSPYKKKCR RWVFDCLEEQ NMSSPCEQEE HRTLELFPLH PEGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN04484.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090009	0.0	BT090009.1 Soybean clone JCVI-FLGm-3K12 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028227674.1	1e-167	WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	5e-72	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A445KVW1	1e-166	A0A445KVW1_GLYSO; WUSCHEL-related homeobox 4
TrEMBL	I1JTL5	1e-166	I1JTL5_SOYBN; Uncharacterized protein
STRING	GLYMA04G04310.1	1e-166	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6132	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	2e-74	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]