PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04533.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 258aa    MW: 28425 Da    PI: 8.4769
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04533.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.5e-32148201255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  KHN04533.1 148 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLSHVKSHLQMYRT 201
                 9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-28145202IPR009057Homeodomain-like
SuperFamilySSF466891.52E-15146202IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-24148201IPR006447Myb domain, plants
PfamPF002491.3E-7149200IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MYTTSHTEMP TFAPLPEPDL SLNISPPFTS DSDAKKVEIS CNGLLTLTTK TLYNDMCSTS  60
DSGSSGSDLS HENGFFGHTD TAYNLGHHEP TLSLGIETTN SNPYPVQQGA LSRNNFSHFH  120
NYQPHSNTLD FKRNARVIHG VKRNARAPRM RWTTTLHAHF VHAVQLLGGH ERATPKSVLE  180
LMNVKDLTLS HVKSHLQMYR TVKSSDKGSA GYGQTGIGLS QKPGIVDLYG VLACERANLP  240
QPLLKGIDFI PYLLSPRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-17149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-17149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-17149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-17149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523587.20.0probable transcription factor KAN4
RefseqXP_014629932.10.0probable transcription factor KAN4
RefseqXP_028227604.10.0probable transcription factor KAN4
SwissprotQ9FJV52e-44KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A445KVM70.0A0A445KVM7_GLYSO; Putative transcription factor KAN4
TrEMBLK7KHW60.0K7KHW6_SOYBN; Uncharacterized protein
STRINGGLYMA04G03801.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.29e-47G2-like family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  3. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  4. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]