PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04612.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 483aa    MW: 54082 Da    PI: 5.5405
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04612.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.21.1e-10216266252
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                 +rl Wt + H++F+  ve  G s +A P +  +l +v+gL+ ++vk HLQ+
  KHN04612.1 216 KRLSWTGDSHTKFLGGVEFSGTSGEAPPNQRHQLRNVPGLAKQNVKNHLQQ 266
                 79************************************************6 PP
2Response_reg27.12.1e-1049130182
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                   vl+vd + + +  + ++l+  gy ev +a+ ++eal+++++k+   +l ll +++p+m+   l+++ire + +l+  ++ta+++
    KHN04612.1  49 VLVVDNNLTCLATVLKILQTLGY-EVVTASLASEALAIIEKKKdeLNLALLEVDLPDMKINSLTEKIREIS-DLQYFLMTANDN 130
                   89*********************.***************888889************************98.999999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.7E-1545156IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.5E-1646154No hitNo description
PROSITE profilePS5011016.72148157IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.9E-749130IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.70E-950146No hitNo description
Gene3DG3DSA:1.10.10.601.7E-7214266IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-7216266IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MLNFLSYSHS TIFPPDTFVV LYTLSEMDSD NFQSVDLRKY ICPVPGIQVL VVDNNLTCLA  60
TVLKILQTLG YEVVTASLAS EALAIIEKKK DELNLALLEV DLPDMKINSL TEKIREISDL  120
QYFLMTANDN PLCNGSKRYF KKPVTIYDLS SLWMYLKWKI EDGSIVTEDV RSYVNNNQEF  180
QPFLNARGQT LQIGKRKEQR HKIGGNQSES LLLKRKRLSW TGDSHTKFLG GVEFSGTSGE  240
APPNQRHQLR NVPGLAKQNV KNHLQQSLQQ ANPIHQHSNI HSSDLNLGSQ YVSQTDNYNG  300
KIHQLPNCHV KICNCMHLHS QRNPLYELSI LSPSDQTSTG QNQLYPPGEL FGAAHYTSGS  360
GEFMNNGNGK SGETCAENTT DIKVFSEDTH VYCVDDLAVQ SEMDFSTLLA NDMCQRFHPF  420
LPVPLPPSDG KEHGISGAEA GQIDEIFYPP NGTQQFSDED LNIWLSMVKS LNCSMVLLEA  480
VEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194216KRKEQRHKIGGNQSESLLLKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04612.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583355.10.0two-component response regulator ARR2 isoform X1
RefseqXP_028239685.10.0two-component response regulator ARR2-like isoform X1
TrEMBLA0A445JTX30.0A0A445JTX3_GLYSO; Two-component response regulator ARR2 isoform A
TrEMBLI1KII40.0I1KII4_SOYBN; Uncharacterized protein
STRINGGLYMA07G08590.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1436288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-20response regulator 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]