PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04698.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 107aa    MW: 12312.7 Da    PI: 8.9204
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04698.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF405e-133382251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +ie + ++ +  + R   ++KKA+EL + C ++v ++ifsst klyey+s
  KHN04698.1 33 FIEKDYKKITVAATRTLQMIKKAKELAIFCTTQVGLVIFSSTRKLYEYAS 82
                6777777777778888899*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.18E-123288IPR002100Transcription factor, MADS-box
SMARTSM004320.00173283IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.3813484IPR002100Transcription factor, MADS-box
PfamPF003191.5E-93480IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-74661IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-76182IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MIDCQVLQLR NDPNPAVREA AILCIEAILT CSFIEKDYKK ITVAATRTLQ MIKKAKELAI  60
FCTTQVGLVI FSSTRKLYEY ASTSFTKVPV FLIFLKYFSL HELVFYF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04698.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0B2PAI51e-71A0A0B2PAI5_GLYSO; Agamous-like MADS-box protein AGL21
STRINGGLYMA07G14363.12e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3555022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.15e-12AGAMOUS-like 21
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]