PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04705.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 137aa    MW: 15753.8 Da    PI: 6.1279
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04705.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.45.2e-2662115155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kprl+W  eLH++F+ av+ L G++kA Pk+il+lm+v+gLt+e+v+SHLQkY+l
  KHN04705.1  62 KPRLVWDVELHRKFLVAVDDL-GIDKAFPKRILDLMNVEGLTRENVASHLQKYKL 115
                 79*******************.*******************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.79759118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2660119IPR009057Homeodomain-like
SuperFamilySSF466898.78E-1860119IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-2362115IPR006447Myb domain, plants
PfamPF002491.4E-565114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAGKFANEEK ASYMAGECSQ AMAPKNNTDQ NIKLGQKRKE QSEDEEEEEY HKENEEHLNQ  60
NKPRLVWDVE LHRKFLVAVD DLGIDKAFPK RILDLMNVEG LTRENVASHL QKYKLDLRKP  120
TRQPSMVAKL GSSDPCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-2360119362ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04705.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541468.14e-68two-component response regulator ARR12
RefseqXP_028188502.13e-68two-component response regulator ARR12-like
SwissprotB8B3I43e-30ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML54e-30ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A0B2P6052e-97A0A0B2P605_GLYSO; Two-component response regulator ARR1
STRINGGLYMA14G19985.19e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2684623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-24response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]