PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04815.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 362aa    MW: 41008.6 Da    PI: 6.7304
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04815.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.97.1e-1176109336
                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 
                  +k +rr+++NReAAr+sR+RKka++++Le    
  KHN04815.1  76 TDKIQRRLAQNREAARKSRLRKKAYVQQLESSRL 109
                 7899*************************97544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.9E-869120No hitNo description
SMARTSM003389.2E-774134IPR004827Basic-leucine zipper domain
PfamPF001709.7E-876112IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.09476120IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.5E-778120No hitNo description
CDDcd147085.03E-2278130No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
PfamPF141448.6E-32164238IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MNSASPQFVS PRSMSVYDPI HQISMWGEGF KSNGNLSAAM PLIDEADMKF DSQSEDASHG  60
ILGEPNKYDQ EASKPTDKIQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LMQLEQELER  120
ARQQGMYIGG GLDSNHLGFA GSVNSGITTF EMEYGHWVNE QNRQITELRN ALNAHIGDVE  180
LRILVDGMMS HYAEMFRMKS AAAKADVFYV MSGMWKTTAE RFFLWIGGFH PSELLKVLGP  240
LIEPLTEQQR LNIYNLGQSC QQAEDALSQG MDKLRQTLAD SVAAGQFMEG TYIPQMTSAM  300
EKLEDLVSFV KQADHLRQET LEQMSRILTI RQAARCLLAL GEYFQRLRAL SSLWSNRPRE  360
PA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04815.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSOYSTGA0.0L28005.1 Glycine max TGACG-motif binding protein (STGA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238287.20.0bZIP transcription factor bZIP52
RefseqXP_028195719.10.0transcription factor TGA4-like isoform X2
SwissprotQ391620.0TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A0B2P6950.0A0A0B2P695_GLYSO; Transcription factor TGA4
TrEMBLA0A0R0HL800.0A0A0R0HL80_SOYBN; Uncharacterized protein
STRINGGLYMA11G36010.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-178TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]