PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04860.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 463aa    MW: 51421.4 Da    PI: 4.827
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04860.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.41.9e-321859102
                   HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   ++ed++++ ++sws+++nsf+v+d+ +fa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F kg+k+ll++i r+k 
    KHN04860.1   1 MVEDPSTDAIVSWSATNNSFIVWDPPQFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLKGQKHLLRSITRRKP 85 
                   89************999*****************************************999.........*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-34183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-28183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.17E-31183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-50183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVEDPSTDAI VSWSATNNSF IVWDPPQFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD  60
RWEFANEGFL KGQKHLLRSI TRRKPAHGQN HQQPQQPHGQ SSSVGACVEV GKFGLEEEVE  120
RLKRDKNVLM QELVRLRQQQ QTTDNQMQTM VQRLQGMEQR QQQMMSFLAK AVQSPGFFAQ  180
FVQQQNDSNR RITEVNKKRR LKQEGMAETE HAATPDGQII KYQPMVNEAA KAMLRQIMKW  240
DTSCVESLNK NSDNYVIGDA SSSSSGMDSS SSSGWTSGVT LKEVSPASVQ SSHVPAATGT  300
QGHVPSTVKP EILSVPQAVA SEKVMKDGAH DPPSIPVSQA DVMIPDLPPI TEMVTGNILD  360
IPEENYMATE TDEGYMDSSL GAGGSFPIDF EGISPDADID DLLANPIWDE ILQTSVPEDI  420
DTNVAEASKG NEVQPMENGW GKTQHMDHLT EQMGLLSSDA KRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2418336129Heat shock factor protein 1
5d5v_B1e-2418336129Heat shock factor protein 1
5d5v_D1e-2418336129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195202NKKRRLKQ
2196201KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340351.10.0heat stress transcription factor 2
RefseqXP_014622410.10.0heat stress transcription factor Hsf-02 isoform X1
RefseqXP_028227554.10.0heat shock factor protein HSF8-like isoform X1
RefseqXP_028227562.10.0heat shock factor protein HSF8-like isoform X1
RefseqXP_028227570.10.0heat shock factor protein HSF8-like isoform X1
SwissprotQ401521e-161HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0B2P6B70.0A0A0B2P6B7_GLYSO; Heat shock factor protein HSF8
STRINGGLYMA01G01990.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-117heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  4. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]