PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04866.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 339aa    MW: 38303.9 Da    PI: 6.5139
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04866.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.93e-201562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+d++ ++G g+W+t +++ g++R++k+c++rw +yl
       KHN04866.1 15 KGPWTPEEDEKLIDYISKHGHGSWRTLPKRAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding53.45.8e-1768112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++e++ ++++++  lG++ W++Ia +++ gRt++++k++w+++
       KHN04866.1  68 RGKFSEEDERIIINLHSVLGNK-WSKIATHLP-GRTDNEIKNYWNTH 112
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-25765IPR009057Homeodomain-like
PROSITE profilePS5129420.0821062IPR017930Myb domain
SuperFamilySSF466893.1E-3212109IPR009057Homeodomain-like
SMARTSM007176.2E-161464IPR001005SANT/Myb domain
PfamPF002493.0E-181562IPR001005SANT/Myb domain
CDDcd001671.75E-121762No hitNo description
PROSITE profilePS5129427.6263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2666117IPR009057Homeodomain-like
SMARTSM007172.1E-1667115IPR001005SANT/Myb domain
PfamPF002491.9E-1568112IPR001005SANT/Myb domain
CDDcd001676.44E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRSPCCEEN VGVKKGPWTP EEDEKLIDYI SKHGHGSWRT LPKRAGLNRC GKSCRLRWTN  60
YLTPDIKRGK FSEEDERIII NLHSVLGNKW SKIATHLPGR TDNEIKNYWN THIRKKLLKM  120
GIDPETHKPR TDLNHLMSLS QLLGTSNLSS AMNTTWGNNP LGLQPDITQL AKIQLLQNLL  180
QLMNNYSFVN VGNNPYLLSN PNLNPLFLNG TNLFQTNKEP HVVFSGSEEY ANPGLYSQAQ  240
SECSQQDVSK SWADLEGGSI PQDTDYNKIS NTTTSRENQA ENPLPALVAF STKMGTVNQM  300
DSNIAQTSTE SPSNTFFDDW EKLLDDETSG RSYWKEILE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04866.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028227645.10.0transcription factor MYB39-like
SwissprotQ9S9Z25e-83MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0B2P6L60.0A0A0B2P6L6_GLYSO; Transcription factor MYB39
STRINGGLYMA01G02070.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-86myb domain protein 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]