PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05002.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 293aa    MW: 31855.3 Da    PI: 8.8987
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05002.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.72.9e-392787262
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                ke+a++cprC+s ntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ss
  KHN05002.1 27 KEQAINCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSS 87
                7899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-292485IPR003851Zinc finger, Dof-type
PfamPF027011.5E-332985IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6213185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVVKPIEDIV VTNTCPKAVE SKPRPQKEQA INCPRCHSIN TKFCYYNNYS LTQPRYFCKT  60
CRRYWTEGGT LRNIPVGGGS RKNKRSSASC STPNNSHNNN NSTNKKLLSD LVITPPTLSH  120
TQNPNSNNTI HQGQDLNLAF PSSTPDFRKI SELVQQNNNN NNSSNNSMSA SASSSSTTTT  180
TSTSHLSALE LLTGITSSSS AGLTSFMPVP VPSDPNSIYT CGFPLQDFKP TLNFSLDGIG  240
NGYTSLQNVQ SGRLLFPSDD LRQVSSSTIT TMDQKQQGDS TGYWTGMLGG GSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8572690.0DQ857269.1 Glycine max Dof19 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219489.10.0dof zinc finger protein DOF4.6 isoform X1
SwissprotQ8LAP84e-54DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A445F8P00.0A0A445F8P0_GLYSO; Dof zinc finger protein DOF4.6
STRINGGLYMA20G35910.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-52Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]