PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05078.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 184aa    MW: 20978.7 Da    PI: 8.2491
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05078.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00073052123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C  C+ +F++   Lk H  +H
  KHN05078.1 30 FRCRLCNHVFPSYQALKAHFESH 52
                89*****************8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.65E-51752No hitNo description
SMARTSM003550.00973052IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9123052IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MNISNFFNNS YQPSFFNSGQ DPRQNSQNGF RCRLCNHVFP SYQALKAHFE SHFTLENPAI  60
RNLYSSNHVN PQRGMIPNPL RPNFPRPMVM QETRNFVNMN FQAPPQQPMV MPQSRANLFP  120
LVIQHNVAAS QSLQGPPQAT QFVNNYVETA QLLAPPIHQG EMEVSPIDGT KPYIDLLDKP  180
IDNN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05078.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358470.0AC235847.2 Glycine max clone GM_WBb0066C09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143246.11e-57hypothetical protein PHAVU_007G056300g
TrEMBLA0A445F8401e-130A0A445F840_GLYSO; Uncharacterized protein
STRINGXP_007143246.15e-57(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1431235
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]