PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05124.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 226aa    MW: 25941.1 Da    PI: 6.0387
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05124.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-17550348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd ll+++++q+G g W++++   g++R++k+c++rw++yl
       KHN05124.1  5 AWTEEEDHLLKKCIQQYGEGKWHRVPILAGLNRCRKSCRLRWLNYL 50
                     7*******************************************97 PP
2Myb_DNA-binding49.11.3e-1556100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ +eE e +++++k+lG++ W++Ia +++ gRt++++k++w+ +
       KHN05124.1  56 RGNFAEEEVEMIIKLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 100
                      8999******************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.797150IPR017930Myb domain
SMARTSM007176.5E-13252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-21557IPR009057Homeodomain-like
SuperFamilySSF466899.17E-28597IPR009057Homeodomain-like
PfamPF002498.1E-16550IPR001005SANT/Myb domain
CDDcd001671.93E-10550No hitNo description
PROSITE profilePS5129424.63351105IPR017930Myb domain
SMARTSM007172.8E-1555103IPR001005SANT/Myb domain
PfamPF002492.0E-135698IPR001005SANT/Myb domain
CDDcd001676.96E-1158101No hitNo description
Gene3DG3DSA:1.10.10.603.3E-2458105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGGVAWTEEE DHLLKKCIQQ YGEGKWHRVP ILAGLNRCRK SCRLRWLNYL RPNIKRGNFA  60
EEEVEMIIKL HKLLGNRWSL IAGRLPGRTA NDVKNYWNCH LSKRLNALEA EDRPITRDVQ  120
VIRPQPRNIG SSSVKRRGGQ NESATDKGVQ QESSMSSLTF DASDGQNHML ESQQDNDIYA  180
CLDQQGIVSE LSMDFQLQGF EAMMNGEGSS SQWDWGDYLL DMDFYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-22610710110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05124.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529126.11e-169transcription factor MYB113
RefseqXP_028238573.11e-169transcription factor MYB113-like
SwissprotQ9FNV95e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0B2PC471e-168A0A0B2PC47_GLYSO; Transcription factor MYB113
TrEMBLI1KK721e-168I1KK72_SOYBN; Uncharacterized protein
STRINGGLYMA07G16980.11e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-57myb domain protein 113
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]