PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN05341.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 976aa MW: 107335 Da PI: 5.7454

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN05341.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	5	63	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ KHN05341.1 5 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63 5679*****************************************************97 PP
2	START	181.1	6.1e-57	149	357	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++l+v+ ++ g+++l +++l KHN05341.1 149 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCNGVAARACGLVGLEPT-RVAEILKDRPLWFRDCRAVDVLNVLPTAngGTIELLYMQL 246 7899****************************************************.8888888888************9999****** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 +a+++l+p Rdf+ +Ry+ l++g++vi+++S+ ++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+++ ++ KHN05341.1 247 YAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQ 345 ***********************************9988899************************************************* PP HHHHHHTXXXXX CS START 194 ktwvatlqrqce 205 kt++a+l+++++ KHN05341.1 346 KTTMAALRHLRQ 357 *****99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.613	1	64	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	2	68	IPR001356	Homeobox domain
CDD	cd00086	1.67E-16	5	65	No hit	No description
SuperFamily	SSF46689	2.91E-16	5	66	IPR009057	Homeodomain-like
Pfam	PF00046	7.1E-16	6	63	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.2E-18	7	63	IPR009057	Homeodomain-like
CDD	cd14686	2.86E-6	57	96	No hit	No description
PROSITE profile	PS50848	25.143	139	353	IPR002913	START domain
CDD	cd08875	3.99E-80	143	358	No hit	No description
Gene3D	G3DSA:3.30.530.20	4.0E-23	148	354	IPR023393	START-like domain
SMART	SM00234	2.3E-42	148	358	IPR002913	START domain
SuperFamily	SSF55961	7.97E-39	148	358	No hit	No description
Pfam	PF01852	1.8E-54	149	357	IPR002913	START domain
SuperFamily	SSF55961	3.19E-5	385	479	No hit	No description
SuperFamily	SSF55961	3.19E-5	509	584	No hit	No description
Pfam	PF08670	4.2E-50	833	975	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence Send to blast
MDNGKYVRYT PEQVEALERL YHDCPKPSSI RRQQLIRECP ILSNIEPKQI KVWFQNRRCR 60 EKQRKESSRL QAVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRQHTQ ITTQATKDTN 120 CESVVTSGQH NLTTQHPPRD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ MPGMKPGPDS 180 IGIVAISHGC NGVAARACGL VGLEPTRVAE ILKDRPLWFR DCRAVDVLNV LPTANGGTIE 240 LLYMQLYAPT TLAPARDFWL LRYTSVLEDG SLVICERSLK NTQNGPSMPP VQHFVRAEML 300 PSGYLIRPCE GGGSIIHIVD HMDLEPWSVP EVLRPLYESS TVLAQKTTMA ALRHLRQISH 360 EVSQSNVTGW GRRPAALRAL SQRLSRGFNE ALNGFTDEGW TTISNDGVDD VTILVNSSPD 420 KLMGLNLSFA NGFPSVSNAV LCAKASMLLQ NVPPAILLRF LREHRSEWAD NNMDAYTAAA 480 IKVGPCSLSG SCVGNFGGQV ILPLAHTIEH EEFLEVIKLE GIAHSPEDTI MPREMFLLQL 540 CSGMDENAVG TCAELISAPI DASFADDAPL LPSGFRIIPL ESGKEASSPN RTLDLASSLD 600 NVPPAILLRF LREHRSEWAD NNMDAYTAAA IKVGPCSLSG SRVGNYGGQV ILPLAHTIEH 660 EEFLEVIKLE GIAHSPEDTI MPREMFLLQL CSGMDENAVG TCAELISAPI DASFADDAPL 720 LPSGFRIIPL ESGKEASSPN RTLDLASSLD VGPSGNRASN GSAGNSSCMR SVMTIAFEFA 780 FESHMQEHVT SMARQYVRSI ISSVQRVALA LSPSHLSSHA GLRSPLGTPE AQTLAHWICN 840 SYRCYLGVEL LKSNNEGNES LLKSLWHHSD AILCCTLKAL PVFTFSNQAG LDMLETTLVA 900 LQDITLEKIF DDHGRKILFS EFPQIIQQGF ACLQGGICLS SMGRPVSYER VVAWKVLNEE 960 ENAHCICFMF VNWSFV

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence Send to blast

MDNGKYVRYT PEQVEALERL YHDCPKPSSI RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKESSRL QAVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRQHTQ ITTQATKDTN  120
CESVVTSGQH NLTTQHPPRD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ MPGMKPGPDS  180
IGIVAISHGC NGVAARACGL VGLEPTRVAE ILKDRPLWFR DCRAVDVLNV LPTANGGTIE  240
LLYMQLYAPT TLAPARDFWL LRYTSVLEDG SLVICERSLK NTQNGPSMPP VQHFVRAEML  300
PSGYLIRPCE GGGSIIHIVD HMDLEPWSVP EVLRPLYESS TVLAQKTTMA ALRHLRQISH  360
EVSQSNVTGW GRRPAALRAL SQRLSRGFNE ALNGFTDEGW TTISNDGVDD VTILVNSSPD  420
KLMGLNLSFA NGFPSVSNAV LCAKASMLLQ NVPPAILLRF LREHRSEWAD NNMDAYTAAA  480
IKVGPCSLSG SCVGNFGGQV ILPLAHTIEH EEFLEVIKLE GIAHSPEDTI MPREMFLLQL  540
CSGMDENAVG TCAELISAPI DASFADDAPL LPSGFRIIPL ESGKEASSPN RTLDLASSLD  600
NVPPAILLRF LREHRSEWAD NNMDAYTAAA IKVGPCSLSG SRVGNYGGQV ILPLAHTIEH  660
EEFLEVIKLE GIAHSPEDTI MPREMFLLQL CSGMDENAVG TCAELISAPI DASFADDAPL  720
LPSGFRIIPL ESGKEASSPN RTLDLASSLD VGPSGNRASN GSAGNSSCMR SVMTIAFEFA  780
FESHMQEHVT SMARQYVRSI ISSVQRVALA LSPSHLSSHA GLRSPLGTPE AQTLAHWICN  840
SYRCYLGVEL LKSNNEGNES LLKSLWHHSD AILCCTLKAL PVFTFSNQAG LDMLETTLVA  900
LQDITLEKIF DDHGRKILFS EFPQIIQQGF ACLQGGICLS SMGRPVSYER VVAWKVLNEE  960
ENAHCICFMF VNWSFV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN05341.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003531652.1	0.0	homeobox-leucine zipper protein ATHB-15
Refseq	XP_028244497.1	0.0	homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A0B2P813	0.0	A0A0B2P813_GLYSO; Homeobox-leucine zipper protein ATHB-15
STRING	GLYMA08G21610.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.3	0.0	HD-ZIP family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]