PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05677.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 221aa    MW: 25056.2 Da    PI: 11.0129
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05677.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-18150183134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  KHN05677.1 150 CLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 183
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.53144180IPR000679Zinc finger, GATA-type
SMARTSM004019.9E-16144194IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-14148206No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14148181IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.20E-14149196No hitNo description
PROSITE patternPS003440150175IPR000679Zinc finger, GATA-type
PfamPF003201.4E-16150184IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MCFPKKQLPK TVRPTYGKTI PIQNVSLKGK DLLQFQTNSP ISVFESSSSS PSVENSNFEL  60
PVIPTKRPRN KRQRLSNISL LFSIPFILTS PTFQKCQRMI FSESDLQTQP AGELLCMVSK  120
KLRKKDIPML ANRIEMKRSS SQESVALRKC LHCEVTKTPQ WREGPMGPKT LCNACGVRYR  180
SGRLFAEYRP AASPTFVSSL HSNSHKKVLE IRNRATQVTV R
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05677.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984950.0BT098495.1 Soybean clone JCVI-FLGm-12F13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028193451.11e-154GATA transcription factor 11-like
TrEMBLA0A0B2PDG81e-160A0A0B2PDG8_GLYSO; GATA transcription factor 11
STRINGGLYMA12G08131.11e-153(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-41GATA family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]