PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05749.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 234aa    MW: 25291.3 Da    PI: 6.7416
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05749.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.4e-39401411101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrr+C ++C++ap+f ++q ++kfa+vhk+FGasnv+kll++++ ++r++a++++ yeA+ar++dPvyG+v++il+lqqq+++l+aela+l+
  KHN05749.1  40 PCGACKFLRRRCIEGCIFAPHFGNDQgAAKFAAVHKVFGASNVSKLLSNISVNRRNEAVTTISYEAQARLSDPVYGCVSTILALQQQVATLQAELAMLQ 138
                 7***********************9989*********************************************************************99 PP

      DUF260  99 eel 101
                 ++l
  KHN05749.1 139 TQL 141
                 875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.23539141IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-3940138IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAESQGDGAS GSRRRGIASR RAMAAQTQDE AMVESSPATP CGACKFLRRR CIEGCIFAPH  60
FGNDQGAAKF AAVHKVFGAS NVSKLLSNIS VNRRNEAVTT ISYEAQARLS DPVYGCVSTI  120
LALQQQVATL QAELAMLQTQ LMNSRFAYAS ALQTTQLQQP NMNAGALQPA YSNNSCASTN  180
LLNLSSFNNN TGFDLEMDTA PSSSSLEPLQ LTRLPLCKEE DEEESKTQQA FNHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-374014711115LOB family transfactor Ramosa2.1
5ly0_B2e-374014711115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05749.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-106AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537147.11e-164LOB domain-containing protein 20
RefseqXP_028182441.11e-164LOB domain-containing protein 20-like
SwissprotQ9SRV35e-69LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0B2PE621e-172A0A0B2PE62_GLYSO; LOB domain-containing protein 20
STRINGGLYMA10G11031.11e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.19e-56LOB domain-containing protein 20
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]