PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05932.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 163aa    MW: 18021.6 Da    PI: 9.171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05932.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00122648123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C++ F++   L  H  +H
  KHN05932.1 26 FECKTCNRKFNSFQALGGHRASH 48
                89**********99999998887 PP
2zf-C2H211.40.00181103123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cg+ Fs    L  H+r+H
  KHN05932.1  81 HNCFICGQGFSLGQALGGHMRRH 103
                 67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.68E-82548No hitNo description
PfamPF139122.4E-112550IPR007087Zinc finger, C2H2
SMARTSM003550.22648IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8272653IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
SuperFamilySSF576672.68E-876103No hitNo description
SMARTSM003551.281103IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.22481108IPR007087Zinc finger, C2H2
PfamPF139121.6E-781105IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MQNCSISITP DTTSVSSSTT SPEEVFECKT CNRKFNSFQA LGGHRASHNK RVEMEGEEQQ  60
LKLKNKGKIY GLGKQSEPKI HNCFICGQGF SLGQALGGHM RRHRDATNDV FSSINQVVAK  120
VSVLKRSCND KVFCLDLNLS PLENDLKLLL FGKVSPKVNP SSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05932.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184148.11e-118zinc finger protein ZAT11-like
TrEMBLA0A0B2PEB11e-116A0A0B2PEB1_GLYSO; Zinc finger protein ZAT11
STRINGGLYMA10G05190.11e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-34C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]