PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05934.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 180aa    MW: 20139.2 Da    PI: 9.8965
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05934.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000974769123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C++ Fs+   L  H  +H
  KHN05934.1 47 FECKTCNRKFSSFQALGGHRASH 69
                89**********99999998887 PP
2zf-C2H214.40.0001191113123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg+ Fs    L  H+r+H
  KHN05934.1  91 HECSICGMEFSLGQALGGHMRKH 113
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.5E-114771IPR007087Zinc finger, C2H2
SuperFamilySSF576671.49E-947113No hitNo description
SMARTSM003550.194769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3054774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-489115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.4E-991115IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.15991118IPR007087Zinc finger, C2H2
SMARTSM003550.05791113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MVAILKRQGE NESEETIIGL AKSLMQLSRV QQQSNKPLLN TFSPTEFECK TCNRKFSSFQ  60
ALGGHRASHK KPKFEAEELK EEAKKTKPKM HECSICGMEF SLGQALGGHM RKHRGAISEN  120
DNNNNEALSS IKQAIAKAPV LKRSNSKRVM CLEMDLNLTP LENDLKLLFG NKAPRVDLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05934.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0916771e-147BT091677.1 Soybean clone JCVI-FLGm-8F13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183421.11e-130zinc finger protein ZAT11-like
TrEMBLA0A0B2PEK71e-128A0A0B2PEK7_GLYSO; Zinc finger protein ZAT11
STRINGGLYMA10G05210.11e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-37C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]