PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN05954.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 371aa MW: 41880.2 Da PI: 6.5353

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN05954.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	297	319	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ KHN05954.1 297 FMCRKCGKAFAVRGDWRTHEKNC 319 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.64	213	240	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.58	213	235	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.7E-6	213	232	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	215	235	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.72E-6	279	317	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	293	317	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	297	317	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	297	317	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MADPYSNFFS PGSFFHHYPS PNPSPHHHPY AHNFLNQNGS NINNHNTFFH FHHFQTTICS 60 SSPPSPPLRE ALPLLTLSPR NEEEQEEDDQ DQDQEILQEN ICTAMDVEEN YNNRTLHLHP 120 KGEEQDQEDT DESVTVALHI GLPSPSAAEI ASVLSSAACS TDKEQQGGHG VGNNNSNNGS 180 EDFSSSGFLS NRLNKGQYWI PTPSQILIGP TQFSCPVCCK TFNRYNNMQM HMWGHGSQYR 240 KGPESLRGTQ PTGMLRLPCY CCSPGCRNNI DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR 300 KCGKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGSGHAA YGIDGFEEEE 360 EPASEVEQDN D

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MADPYSNFFS PGSFFHHYPS PNPSPHHHPY AHNFLNQNGS NINNHNTFFH FHHFQTTICS  60
SSPPSPPLRE ALPLLTLSPR NEEEQEEDDQ DQDQEILQEN ICTAMDVEEN YNNRTLHLHP  120
KGEEQDQEDT DESVTVALHI GLPSPSAAEI ASVLSSAACS TDKEQQGGHG VGNNNSNNGS  180
EDFSSSGFLS NRLNKGQYWI PTPSQILIGP TQFSCPVCCK TFNRYNNMQM HMWGHGSQYR  240
KGPESLRGTQ PTGMLRLPCY CCSPGCRNNI DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR  300
KCGKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGSGHAA YGIDGFEEEE  360
EPASEVEQDN D

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN05954.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098893	0.0	BT098893.1 Soybean clone JCVI-FLGm-23O4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003519064.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-145	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0B2PEM0	0.0	A0A0B2PEM0_GLYSO; Protein TRANSPARENT TESTA 1
TrEMBL	I1JG69	0.0	I1JG69_SOYBN; Uncharacterized protein
STRING	GLYMA02G31270.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-130	C2H2 family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]