PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05995.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 259aa    MW: 30015.8 Da    PI: 8.3774
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05995.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF275.6e-0926511843
                HHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF 18 ngilKKAeELSvLCdaevaviifsst 43
                ng++KK  E+S+LC++e++ ii+ ++
  KHN05995.1 26 NGLIKKLDEISTLCGIEACAIIYTPN 51
                8**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.58E-122494IPR002100Transcription factor, MADS-box
PfamPF003192.9E-72652IPR002100Transcription factor, MADS-box
CDDcd002666.80E-152683No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSMWVTKDMT PHACDLWKKE IEGKENGLIK KLDEISTLCG IEACAIIYTP NDPQSEVWPS  60
DLGIQSLLSR FRRIPELQKS KKMFDQESFL RQSIIKAQEH PKKQKNENRK HEMTHLMFHY  120
LTIGKIFNNP NLIDLNYLSW LIDQNLNEIE KKINRILTQE VTPVIENGGE KAYTNHVPGQ  180
GSNMNAMQKH WSMEFIMVVP GMRCYHSEMS MPKMTFGQAH MWYGWCGAVV RVGESFHLGL  240
KVSFFPSSSL QSHLLCLNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05995.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552919.11e-135agamous-like MADS-box protein AGL80
TrEMBLA0A0B2P9D60.0A0A0B2P9D6_GLYSO; Agamous-like MADS-box protein AGL80
STRINGGLYMA18G06040.12e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-35AGAMOUS-like 80
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]