PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05998.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 292aa    MW: 33312.1 Da    PI: 8.5694
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05998.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.9e-161053245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                +i n+s+r++   kR++ +lKK eELS+LC++e++ i+++++++
  KHN05998.1 10 FIANDSQRKTVCKKRKQSLLKKTEELSTLCGIEACAIVYGPNDH 53
                799*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.778151IPR002100Transcription factor, MADS-box
SMARTSM004329.0E-17160IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-5323IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-21495IPR002100Transcription factor, MADS-box
CDDcd002661.23E-24585No hitNo description
PfamPF003191.5E-141052IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-53859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MATGKLKLTF IANDSQRKTV CKKRKQSLLK KTEELSTLCG IEACAIVYGP NDHRPEIWPS  60
ESGVKNVLGK FMNKPQWEQS KKMMNQESFI AQSIMKSKDK LQKVVKENKE IEMSLFMAQC  120
FQTANQVTPN QPDIESSTFQ PQIMQTSAFQ PQIQIPAFET QIQTQTYQYQ METPTFQPQM  180
QSPALFQPQI QTASYQPHMQ TQSYHPHMQA TSFPTQMQAP SYQPQMQTPA YQPDIQTLAF  240
EPQMQTPAPE EMTLMNYGYG SGMNANHMHR QKFNGNGYET IMPAFGGAKL PL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11524QRKTVCKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05998.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357391e-137AC235739.1 Glycine max strain Williams 82 clone GM_WBb0002K19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552915.10.0MADS-box transcription factor PHERES 1
TrEMBLA0A0B2PEC10.0A0A0B2PEC1_GLYSO; Agamous-like MADS-box protein AGL80
STRINGGLYMA18G05963.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3654422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-32AGAMOUS-like 80
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]