PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06001.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 205aa    MW: 23462.2 Da    PI: 8.1854
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06001.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.51.5e-121052244
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                +i+ +s r+ t+ k ++g+lKK  E S+LC++e++ i++s++ 
  KHN06001.1 10 FISYDSARKLTYKKMKKGMLKKIDEPSTLCGIEACAIVYSPKE 52
                79999***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.175151IPR002100Transcription factor, MADS-box
SMARTSM004326.9E-10161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-13153IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-5323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-111151IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-53859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTRKKVQPAF ISYDSARKLT YKKMKKGMLK KIDEPSTLCG IEACAIVYSP KELTLFMFQC  60
LNEGRARPDN NMTTANLNFL SWMVDQNLKN IDKRMETLKV NEMTQNIQPQ MQTPALNYAL  120
GSDMNTAEPM QTQWFMDFLN NGDGDERLIM PAFGDANNPT PNWLLVKPVA LKKRDVLVTS  180
PLGDHVSVEF SFVWFGYFYC PCVSM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVQPAFISYDSARKLTYKKMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186499.16e-41agamous-like MADS-box protein AGL80
TrEMBLA0A0B2P9W31e-152A0A0B2P9W3_GLYSO; MADS-box transcription factor PHERES 1
STRINGGLYMA18G05916.12e-27(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3654222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-10AGAMOUS-like 80
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]