PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06382.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 527aa    MW: 59280.7 Da    PI: 7.2314
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06382.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.73.2e-30167261189
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                 f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  KHN06382.1 167 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDMVSFQRGvGElYR 261
                 89***************************966667889*************************************************54354444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-40156258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-29163255IPR015300DNA-binding pseudobarrel domain
CDDcd100175.51E-26165254No hitNo description
PfamPF023621.3E-27167270IPR003340B3 DNA binding domain
SMARTSM010193.7E-21167268IPR003340B3 DNA binding domain
PROSITE profilePS5086314.001167267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MELMQEVKGY SDGREEEEEE EEAAEEIITR EESSSKHHYP FSSTSNLSLS SSAPSISSNY  60
TSTTTTAARP HHHHHHQEAA GSNFIINNNH HHHQHHHHHT TKQLDFMDLS LGSSKDEGNL  120
QGSSSSVYAH HHHAASASSS ANGNNNNSSS SNLQQQQQQP AEKEHMFDKV VTPSDVGKLN  180
RLVIPKQHAE KYFPLDSSAN EKGLLLNFED RNGKLWRFRY SYWNSSQSYV MTKGWSRFVK  240
EKKLDAGDMV SFQRGVGELY RHRLYIDWWR RPDHHHHHHH GPDHSTTLFT PFLIPNQPHH  300
LMSIRWGATG RLYSLPSPTP PRHHEHLNYN NNAMYHPFHH HGAGSGINAT THHYNNYHEM  360
SSTTTSGSAG SVFYHRSTPP ISMPLADHQT LNTRQQQQQQ QQQEGAGNVS LSPMIIDSVP  420
VAHHLHHQQH HGGKSSGPSS TSTSPSTAGK RLRLFGVNME CASSTSEDPK CFSLLSSSSM  480
ANSNSQPPLQ LLREDTLSSS SARFGDQRGV GEPSMLFDLD PSLQYRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-621612722114B3 domain-containing transcription factor NGA1
5os9_B1e-621612722114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06382.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352930.0AC235293.1 Glycine max strain Williams 82 clone GM_WBb0059D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529866.20.0B3 domain-containing protein Os03g0120900
RefseqXP_006583192.10.0B3 domain-containing protein Os03g0120900
RefseqXP_028239294.10.0B3 domain-containing protein Os03g0120900-like
RefseqXP_028239295.10.0B3 domain-containing protein Os03g0120900-like
RefseqXP_028239296.10.0B3 domain-containing protein Os03g0120900-like
TrEMBLA0A445JSG00.0A0A445JSG0_GLYSO; B3 domain-containing protein isoform A
TrEMBLK7KZP10.0K7KZP1_SOYBN; Uncharacterized protein
STRINGGLYMA07G05381.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-64B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]