PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06383.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 367aa    MW: 41668.1 Da    PI: 4.5102
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06383.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.34.6e-30911430128
         NAM  30 leevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektd 120
                 + +vi+ +d+++vePwd p        +++ ++  w+fFs+ d ky+++kr nr+tk g+Wkatgkd+++ +  +++++g+kktLv+y+gr + g+k++
  KHN06383.1   9 A-HVIPVIDLCDVEPWDVPVmlaksssAIRFGDPYWFFFSPVDFKYSRSKRFNRTTKCGFWKATGKDRDIRTGdTNTVIGTKKTLVYYQGRVSCGVKSN 106
                 3.78***************536655544444888*************************************98566779******************** PP

         NAM 121 Wvmheyrl 128
                 Wv+hey++
  KHN06383.1 107 WVIHEYHA 114
                 ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.9541132IPR003441NAC domain
SuperFamilySSF1019413.01E-332132IPR003441NAC domain
PfamPF023658.6E-1435113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MLLGNDPRAH VIPVIDLCDV EPWDVPVMLA KSSSAIRFGD PYWFFFSPVD FKYSRSKRFN  60
RTTKCGFWKA TGKDRDIRTG DTNTVIGTKK TLVYYQGRVS CGVKSNWVIH EYHAVTFHES  120
QRTFVLCCLI KKPGKATEGG TDALICDEGE PSRSMVSDYE NQATLKVLLP ATPWAENCFS  180
PIQQSPTSIE QEGASFPNYA FNNAYFRNED NVMQTPFETT KEDEFLNSIL AGESIVINEE  240
NKHNFVHSST QSESLRRVYL ESSDTDAEVI SKLDDNIVDI STAFTEYPNS DEYYSSKRFK  300
SSHDTVYGDI CFPSSNLEAN QEKNESMFQD NFWGAETSSC DSTIDKPLEI NYIDISSSPF  360
TPWSWEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-20413841171NO APICAL MERISTEM PROTEIN
1ut4_B2e-20413841171NO APICAL MERISTEM PROTEIN
1ut7_A2e-20413841171NO APICAL MERISTEM PROTEIN
1ut7_B2e-20413841171NO APICAL MERISTEM PROTEIN
3swm_A3e-20413844174NAC domain-containing protein 19
3swm_B3e-20413844174NAC domain-containing protein 19
3swm_C3e-20413844174NAC domain-containing protein 19
3swm_D3e-20413844174NAC domain-containing protein 19
3swp_A3e-20413844174NAC domain-containing protein 19
3swp_B3e-20413844174NAC domain-containing protein 19
3swp_C3e-20413844174NAC domain-containing protein 19
3swp_D3e-20413844174NAC domain-containing protein 19
4dul_A2e-20413841171NAC domain-containing protein 19
4dul_B2e-20413841171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06383.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028239292.10.0NAC domain-containing protein 62-like isoform X2
TrEMBLA0A445JSG10.0A0A445JSG1_GLYSO; NAC domain-containing protein 62 isoform B
STRINGGLYMA16G01940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.35e-33NAC transcription factor-like 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]