PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN06418.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 250aa MW: 27678 Da PI: 9.1012

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN06418.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95	5.3e-30	85	143	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers dp+++++tY+++Hnh+ KHN06418.1 85 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSCVDPTMLVVTYSSDHNHP 143 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.9E-31	79	145	IPR003657	WRKY domain
SuperFamily	SSF118290	6.15E-26	82	145	IPR003657	WRKY domain
SMART	SM00774	1.1E-34	84	144	IPR003657	WRKY domain
PROSITE profile	PS50811	31.755	85	145	IPR003657	WRKY domain
Pfam	PF03106	1.7E-25	86	143	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDSKFRKKNR NVNSYTSEQD QDTDIAQENL AESPPSSTVF NIDGLVPSPT SSSKRRRAIQ 60 KRVVQIPMKE TEGCRLKGES NTPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK 120 QVERSCVDPT MLVVTYSSDH NHPWPPSRNH ARPTKKPEPV PDPVQPEPEE KFADLGGDDS 180 MITTAEELGW LGEMETTSST VLESPIMATG YHADVALIQA GAADGAAAVH GAVVWDHKLR 240 AKKSTRKEKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	5e-20	86	145	18	79	Disease resistance protein RRS1
5w3x_D	5e-20	86	145	18	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN06418.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU019584	0.0	EU019584.1 Glycine max WRKY48 (WRKY48) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237221.2	1e-153	WRKY transcription factor 48
Refseq	XP_028243595.1	1e-153	probable WRKY transcription factor 65 isoform X2
Swissprot	Q9LP56	9e-61	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A0R4J3W0	1e-152	A0A0R4J3W0_SOYBN; Uncharacterized protein
TrEMBL	A0A445JDE0	1e-152	A0A445JDE0_GLYSO; Putative WRKY transcription factor 65
STRING	GLYMA08G12460.1	1e-153	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	5e-63	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]