PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN06442.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 96aa MW: 10969.7 Da PI: 10.3972

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN06442.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.5	2.7e-31	25	75	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey++ KHN06442.1 25 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYAN 75 79***********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.726	17	77	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-31	17	88	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.8E-42	17	76	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.33E-40	18	82	No hit	No description
PRINTS	PR00404	3.9E-33	19	39	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	19	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-27	26	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-33	39	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-33	54	75	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MALPNQSMSS ESPQRKMGRG KIEIKRIENT TSRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSNRGRL YEYANNSFFH VINIVHAASF GKIEFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	6e-21	17	82	1	66	Myocyte-specific enhancer factor 2B
1tqe_Q	6e-21	17	82	1	66	Myocyte-specific enhancer factor 2B
1tqe_R	6e-21	17	82	1	66	Myocyte-specific enhancer factor 2B
1tqe_S	6e-21	17	82	1	66	Myocyte-specific enhancer factor 2B
6c9l_A	6e-21	17	82	1	66	Myocyte-specific enhancer factor 2B
6c9l_B	6e-21	17	82	1	66	Myocyte-specific enhancer factor 2B
6c9l_C	6e-21	17	82	1	66	Myocyte-specific enhancer factor 2B
6c9l_D	6e-21	17	82	1	66	Myocyte-specific enhancer factor 2B
6c9l_E	6e-21	17	82	1	66	Myocyte-specific enhancer factor 2B
6c9l_F	6e-21	17	82	1	66	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN06442.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093434	1e-113	BT093434.1 Soybean clone JCVI-FLGm-14I9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006580183.1	9e-50	floral homeotic protein AGAMOUS-like isoform X1
Refseq	XP_028232906.1	9e-50	floral homeotic protein AGAMOUS-like isoform X1
Swissprot	Q40168	2e-40	AG_SOLLC; Floral homeotic protein AGAMOUS
TrEMBL	A0A445JDG3	2e-56	A0A445JDG3_GLYSO; Floral homeotic protein AGAMOUS isoform A
STRING	GLYMA05G29595.1	4e-49	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	6e-40	MIKC_MADS family protein

Publications ? help Back to Top
Pan IL,McQuinn R,Giovannoni JJ,Irish VF Functional diversification of AGAMOUS lineage genes in regulating tomato flower and fruit development. J. Exp. Bot., 2010. 61(6): p. 1795-806 [PMID:20335407] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Gimenez E, et al. TOMATO AGAMOUS1 and ARLEQUIN/TOMATO AGAMOUS-LIKE1 MADS-box genes have redundant and divergent functions required for tomato reproductive development. Plant Mol. Biol., 2016. 91(4-5): p. 513-31 [PMID:27125648]