PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN06472.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 204aa MW: 22859.3 Da PI: 9.1405

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN06472.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.5	4e-32	109	165	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rak+e+e+k+ +++rkpylheSRhkhAl RpRg+gGrF KHN06472.1 109 EEPVFVNAKQYHGILRRRQYRAKAESENKV-IRNRKPYLHESRHKHALTRPRGCGGRF 165 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.3E-36	107	168	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.431	108	168	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.2E-27	110	165	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.1E-23	111	133	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	113	133	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.1E-23	142	165	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MHYKTLDNED DGQQQSESPM QPPSVNGISD PGISTQNVNV QYAAPGQLGT GHAMVPHVYP 60 YPDPYYRSIF APYDTQPYPP QAYSGQPMVH LQLMGIQQAG VPLPTDAVEE PVFVNAKQYH 120 GILRRRQYRA KAESENKVIR NRKPYLHESR HKHALTRPRG CGGRFLNSKK DKNQNDDVAS 180 ADKSQSNINI NSNKNDQTSS DRAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	108	169	1	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN06472.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095253	0.0	BT095253.1 Soybean clone JCVI-FLGm-7E1 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028232944.1	1e-146	nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q84JP1	1e-65	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A445KPE6	1e-144	A0A445KPE6_GLYSO; Nuclear transcription factor Y subunit A-7 isoform C
STRING	GLYMA05G29970.1	1e-145	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-54	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]