PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06486.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 215aa    MW: 24514.6 Da    PI: 5.3874
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06486.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-061034123
                EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                + Cp  dCgk++ + + Lk+Hi +H
  KHN06486.1 10 HICPypDCGKRYAHEYKLKNHIASH 34
                679999*****************96 PP
2zf-C2H213.60.000197499123
                EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                y Cp   C k + + + L+ H+++ H
  KHN06486.1 74 YACPydGCEKAYIHEYKLRLHLKReH 99
                89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-9136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-6136No hitNo description
SMARTSM003550.00281034IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4731039IPR007087Zinc finger, C2H2
PROSITE patternPS0002801235IPR007087Zinc finger, C2H2
SuperFamilySSF576677.54E-66997No hitNo description
Gene3DG3DSA:3.30.160.603.0E-97096IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0097499IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.34974104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807699IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MKTHSQENYH ICPYPDCGKR YAHEYKLKNH IASHHEKNAS VDVTKYTTPP SEKQTKTSKP  60
SGGAYGSASS DRPYACPYDG CEKAYIHEYK LRLHLKREHP GLMADENAEH AQANVDNEMD  120
EASDHDAYVA KRSNGKIQKQ SKPKPNLKLP PSKIAKRKLS TPSLTVNKNS WPVKDEPFDE  180
EDSEETEEDR DNVEDGWRYA GGNNEDDDEE TEYED
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06486.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0993870.0BT099387.1 Soybean clone JCVI-FLGm-23J16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525002.11e-156zinc finger transcription factor YY1-like
RefseqXP_028232967.11e-156zinc finger transcription factor YY1-like
SwissprotQ2V3L35e-61YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A445KQ071e-155A0A445KQ07_GLYSO; Zinc finger transcription factor YY1
STRINGGLYMA05G30150.11e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-53C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]