PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06505.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 146aa    MW: 16738 Da    PI: 7.4523
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06505.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA374.5e-12530833
        GATA  8 kTplWRrgpdgnktLCnaCGlyyrkk 33
                 +p+WR+gp+ ++ LCnaCGl+y k 
  KHN06505.1  5 ASPHWRSGPEDKSVLCNACGLRYTKW 30
                59*******99999*********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.101.0E-8429IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.09E-7542No hitNo description
PfamPF003202.1E-9529IPR000679Zinc finger, GATA-type
CDDcd002026.55E-8631No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MVSSASPHWR SGPEDKSVLC NACGLRYTKW GSIGLQNYFP NHFKPEYLDN LKNLEGRNNV  60
LQGGKIHVMW NPYVPSRKRS RVVRMTTSIQ RFHEQLLMMW KNEENSNDQS SQESEEVLLI  120
DNVNNFIPCN EIGLGCILLK PEDASA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06505.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580230.11e-100GATA transcription factor 17-like
RefseqXP_028230998.11e-100GATA transcription factor 17-like
RefseqXP_028230999.11e-100GATA transcription factor 17-like
TrEMBLA0A0R0K1U42e-99A0A0R0K1U4_SOYBN; Uncharacterized protein
STRINGGLYMA05G30385.16e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.11e-07GATA transcription factor 27
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]