PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06556.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 314aa    MW: 35454.1 Da    PI: 4.5601
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06556.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1857110356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  KHN06556.1  57 KKRRLNVDQVKALEKNFEVENKLEPDRKVKLAEELGLQPRQVAVWFQNRRARWK 110
                 5668999**********************************************9 PP
2HD-ZIP_I/II126.98.6e-4156148193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl+ +qvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y +lk + ++L++++e+L +++ke
   KHN06556.1  56 EKKRRLNVDQVKALEKNFEVENKLEPDRKVKLAEELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYGSLKLNFDTLQQDNEALLKQIKE 148
                  69****************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1942114IPR009057Homeodomain-like
PROSITE profilePS5007117.23252112IPR001356Homeobox domain
SMARTSM003891.6E-1755116IPR001356Homeobox domain
CDDcd000863.89E-1657113No hitNo description
PfamPF000467.5E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-1959119IPR009057Homeodomain-like
PRINTSPR000311.0E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000311.0E-592108IPR000047Helix-turn-helix motif
PfamPF021834.6E-17112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MKRLGSSDTL GALMTICPPT DEHSPRNNHV YGKEFQSMLE GLDEEGCVEE AGHHSEKKRR  60
LNVDQVKALE KNFEVENKLE PDRKVKLAEE LGLQPRQVAV WFQNRRARWK TKQLERDYGV  120
LKANYGSLKL NFDTLQQDNE ALLKQIKELK SRLVQEENNN NTESDVSVKE EMIATLQDSN  180
PLCESAIPGS DSKELSYECF NKSDEVGGGS VFPVDFKDGS SDSDSSAILN EENNHSPNNN  240
AAISSCGVLQ SHGLLSSPSS SSMNNCFQFQ KQYQTTTQYV KMEEHNFLSA DEACNFFSDE  300
QAPTLQWYCS EEWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06556.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311650.0KT031165.1 Glycine max clone HN_CCL_178 homeodomain/HOMEOBOX transcription factor (Glyma08g14130.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028233081.10.0homeobox-leucine zipper protein ATHB-6-like isoform X1
RefseqXP_028233082.10.0homeobox-leucine zipper protein ATHB-6-like isoform X1
SwissprotQ940J12e-81ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A445KPS80.0A0A445KPS8_GLYSO; Homeobox-leucine zipper protein ATHB-16 isoform A
STRINGGLYMA05G30940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.15e-68homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]