PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN06594.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 364aa MW: 40214.1 Da PI: 10.2992

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN06594.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.1	1.7e-16	65	149	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ + +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + ++ + s++p++++l+ KHN06594.1 65 EWSEGAVTTLLEAYEAKWVHRNRAKLKGHDWEDVAKHVsaraNSTKSPKTQTQCKNKIESMKKRYRSESATTADA-----SSWPLYSRLD 149 5***********************************87777777888999************9999984.....57**9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.7E-20	63	150	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MEDNNNNNNK AEKQQDDSSH HPSLLLPKPN HSTINNIKED HHQSPRKLAI GGGGGGSGDR 60 LKRDEWSEGA VTTLLEAYEA KWVHRNRAKL KGHDWEDVAK HVSARANSTK SPKTQTQCKN 120 KIESMKKRYR SESATTADAS SWPLYSRLDV LLRGTGLISS SLPPPIAATA IAAPSQSPHA 180 TINNNQALVL LEPPSLAVLQ APPSVAPPPI AIAQNSHGPN GVERLLAKED GIGAKSSEQV 240 SNKNPMDSDS STPALYSKKD KVRCNKRKMK SENNNKRRRN NNNNNEDVEI AKSIRWLAEV 300 VVRSEQTRMD TMKEIERMRV EAEAKRGEME LKRTEIIANT QLEIARIFAS VNKGVDSSLR 360 IGRS

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MEDNNNNNNK AEKQQDDSSH HPSLLLPKPN HSTINNIKED HHQSPRKLAI GGGGGGSGDR  60
LKRDEWSEGA VTTLLEAYEA KWVHRNRAKL KGHDWEDVAK HVSARANSTK SPKTQTQCKN  120
KIESMKKRYR SESATTADAS SWPLYSRLDV LLRGTGLISS SLPPPIAATA IAAPSQSPHA  180
TINNNQALVL LEPPSLAVLQ APPSVAPPPI AIAQNSHGPN GVERLLAKED GIGAKSSEQV  240
SNKNPMDSDS STPALYSKKD KVRCNKRKMK SENNNKRRRN NNNNNEDVEI AKSIRWLAEV  300
VVRSEQTRMD TMKEIERMRV EAEAKRGEME LKRTEIIANT QLEIARIFAS VNKGVDSSLR  360
IGRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN06594.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-130	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003523957.1	0.0	trihelix transcription factor ASIL2
Refseq	XP_028228771.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A0B2PG46	0.0	A0A0B2PG46_GLYSO; Trihelix transcription factor ASIL2
TrEMBL	K7KJY7	0.0	K7KJY7_SOYBN; Uncharacterized protein
STRING	GLYMA04G17330.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4994	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-97	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]