PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06667.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 208aa    MW: 22981.5 Da    PI: 4.8823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06667.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.81.3e-134077142
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeA 42
                + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+A
  KHN06667.1 40 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMA 77
                68*****998.**********843...6************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-74077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-204180IPR001471AP2/ERF domain
PROSITE profilePS5103216.4634199IPR001471AP2/ERF domain
SMARTSM003802.7E-134193IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-134179IPR016177DNA-binding domain
PRINTSPR003671.1E-84253IPR001471AP2/ERF domain
CDDcd000181.27E-184277No hitNo description
PRINTSPR003671.1E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRVSAQNSTS FLPSSPSSSS PPLSSESKTE KRNRESNNHP VYRGVRMRNW GKWVSEIREP  60
RKKSRIWLGT FPTPEMAGVS LASRDVQAAA AKAAHMDLPS SSSSISLSLG STTPSSSSSS  120
LSSLASTADL LLLSTASEEL SEIIELPRLE TTSYELGNEF VFMDSQDTWM YQPPIPWLHT  180
TYDGSDANEF AVPESRVMTN FEGFLWDY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06667.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354440.0AC235444.1 Glycine max strain Williams 82 clone GM_WBb0158O04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028210366.12e-97ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD31e-41DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0B2PGH51e-147A0A0B2PGH5_GLYSO; Dehydration-responsive element-binding protein 3
STRINGGLYMA17G27520.21e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]