PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06707.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 195aa    MW: 22014 Da    PI: 8.7924
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06707.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.61.3e-15111136126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +ktelC+ +++tGtC+yGd C+FaHg
  KHN06707.1 111 FKTELCNKWQETGTCPYGDHCQFAHG 136
                 79***********************8 PP
2zf-CCCH19.51.8e-06149173125
                 --S---SGGGGTS.--TTTTT-SS-S CS
     zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                 ykte Cr  ++ G  C+yG rC+F H
  KHN06707.1 149 YKTEVCRMVLA-GvVCPYGHRCHFRH 173
                 9**********.66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-19106143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-11107142IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004110138IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-12111136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-12144177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-8144178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803148176IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4148175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MYNALEAIFS NNKELQEISE ESPTSVIENN NVVEVERFSL PKSISVRSNG YLKTAQSAAL  60
APNNNNATRN KGATRPRASA TPPEPVQKVY VRGGQKEEEP LEMIVYNQGM FKTELCNKWQ  120
ETGTCPYGDH CQFAHGIGEL RPVIRHPRYK TEVCRMVLAG VVCPYGHRCH FRHALTEQEK  180
AVVSQPKPRS MKLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22111177470Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06707.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-147AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183258.11e-136zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F51e-68C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A445ITM21e-135A0A445ITM2_GLYSO; Zinc finger CCCH domain-containing protein 15
STRINGGLYMA10G41531.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-68C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]