PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN06800.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 171aa MW: 18738.6 Da PI: 7.7088

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN06800.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.6	5.2e-30	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++dC+l+ ++ p++q++++ +v k+FG+++++++l+++p+++r+++++sl+yeA r+ +Pv+Gavg++++++++l+q+ +e KHN06800.1 2 SCNGCRVLRKGCSDDCMLRHCLlwienPQAQAHATLFVTKFFGRATLMSFLSTVPPNQRSALFESLLYEAVGRTINPVNGAVGLLWTGNWHLCQMGVEK 100 6*********************************************************************************************98876 PP DUF260 95 al 96 +l KHN06800.1 101 VL 102 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.795	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-27	2	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MSCNGCRVLR KGCSDDCMLR HCLLWIENPQ AQAHATLFVT KFFGRATLMS FLSTVPPNQR 60 SALFESLLYE AVGRTINPVN GAVGLLWTGN WHLCQMGVEK VLRGGAAAAL TPLIPQVITT 120 SVVRGEIMCH QPKKQCVGTP SEDEESETST FASRPQDSAP QPQTNLLTLF F

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN06800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235177	1e-84	AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003535688.1	1e-126	LOB domain-containing protein 38
Refseq	XP_028182561.1	1e-126	LOB domain-containing protein 38-like
Swissprot	Q9SN23	1e-55	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A445ISS9	1e-124	A0A445ISS9_GLYSO; LOB domain-containing protein 38
TrEMBL	K7LLG5	1e-124	K7LLG5_SOYBN; Uncharacterized protein
STRING	GLYMA10G40421.1	1e-125	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	4e-57	LOB domain-containing protein 38

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]