PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06802.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 163aa    MW: 17880.8 Da    PI: 6.6754
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06802.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0005888110123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k F++   L  H  +H
  KHN06802.1  88 HRCTVCNKAFPSYQALGGHKASH 110
                 79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.31E-587112No hitNo description
PfamPF139123.8E-1488112IPR007087Zinc finger, C2H2
PROSITE profilePS501579.22488115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MALEALNSPT AATTPFRGYQ EEEEEVDLHL REPWAKRKRS KRPRFESEEE YLALCLIMLA  60
QSGNNNNTQL PSSSQSHKEA SPPLKLSHRC TVCNKAFPSY QALGGHKASH RKASSESNTT  120
ASAVAVSATA NDSKVGVEQE VESPLPVTAK RPRLFSGEDN EEA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06802.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7438880.0JQ743888.1 Glycine max C2H2-type zinc finger protein (STF-2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536582.14e-82zinc finger protein ZAT10
RefseqXP_028185901.14e-82zinc finger protein ZAT10-like
SwissprotQ9SSW19e-30AZF1_ARATH; Zinc finger protein AZF1
TrEMBLR4I7E12e-90R4I7E1_SOYBN; C2H2-type zinc finger protein (Fragment)
STRINGGLYMA10G40400.12e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-28zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]