PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06893.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 297aa    MW: 33437.3 Da    PI: 10.0604
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06893.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.2e-06170190222
                 EETTTTEEESSHHHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                  C++C  s+s++snLk+H+r 
  KHN06893.1 170 YCKICQISCSSPSNLKQHLRG 190
                 5******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.11E-10165198No hitNo description
SMARTSM004514.9E-6166200IPR003604Zinc finger, U1-type
SMARTSM003550.06169193IPR015880Zinc finger, C2H2-like
PfamPF128745.3E-10170193No hitNo description
PROSITE patternPS000280171193IPR007087Zinc finger, C2H2
SMARTSM004510.065204238IPR003604Zinc finger, U1-type
SuperFamilySSF576674.24E-7204239No hitNo description
SMARTSM00355140207231IPR015880Zinc finger, C2H2-like
PfamPF128741.1E-5208231No hitNo description
PROSITE patternPS000280209231IPR007087Zinc finger, C2H2
SuperFamilySSF576671.28E-7242282No hitNo description
SMARTSM004510.027249283IPR003604Zinc finger, U1-type
SMARTSM00355130252276IPR015880Zinc finger, C2H2-like
PfamPF128747.8E-6253276No hitNo description
PROSITE patternPS000280254276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKFSSLSGTK RKESPTRSTH HPRLKHQQPF HGSLNHEVQT GACDVKPSND ASLPKPLPGP  60
SSIKFPSLSG TKRKESPTRS TDYLCLQHQQ PFHGSRNHEM KTGATDFSLN VKSSNDASLP  120
KSLPGPCTSK FSSLLGTKGK ESPSSDHLRL QHHHPFHGTL NHEGELDDIY CKICQISCSS  180
PSNLKQHLRG RKHEQMLQKG GSNSQMQWCE VCCIPCMNED LLKMHFQGQK HKAKLQMLEI  240
SKQGVEAPNK PKWCALCKLW CSDEFAFRLH LGGKKHVKKK DVHKDTMTFI RKIDHAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06893.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581982.20.0uncharacterized protein LOC102666094 isoform X2
TrEMBLA0A0B2PH170.0A0A0B2PH17_GLYSO; Zinc finger RNA-binding protein 2
STRINGGLYMA06G21315.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1811722
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]