PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06927.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 27973.6 Da    PI: 9.9516
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06927.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312473150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  KHN06927.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                79***********************************************8 PP
2K-box1081.1e-35941927100
       K-box   7 ks.leeakaeslqqelakLkkeienLqreqR....hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                    ++ea+a+ +qqe++kL+++i++Lq+++R    +++Ge+L++L+ keL++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k++e
  KHN06927.1  94 AGsASEANAQFYQQEADKLRAQISSLQNNNRqvesQMMGESLGPLTAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAE 192
                 444899*********************8888333369***********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-421675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.1321676IPR002100Transcription factor, MADS-box
CDDcd002655.05E-451786No hitNo description
SuperFamilySSF554554.45E-331788IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003199.3E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-335374IPR002100Transcription factor, MADS-box
PfamPF014861.9E-2499190IPR002487Transcription factor, K-box
PROSITE profilePS5129714.531102196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAFPNPSMSV SPQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVKAT IERYKKACSD SSGAGSASEA NAQFYQQEAD KLRAQISSLQ  120
NNNRQVESQM MGESLGPLTA KELKNLETKL EKGISRIRSK KNELLFAEIE YMQKREIDLH  180
NNNQLLRAKI AEGERNHHNL AVLPGGSNYD SLQTSQQQFD SRGYFQVTGL QPNNQYARQD  240
QMSLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-211684169Myocyte-specific enhancer factor 2B
1tqe_Q3e-211684169Myocyte-specific enhancer factor 2B
1tqe_R3e-211684169Myocyte-specific enhancer factor 2B
1tqe_S3e-211684169Myocyte-specific enhancer factor 2B
5f28_A4e-211684169MEF2C
5f28_B4e-211684169MEF2C
5f28_C4e-211684169MEF2C
5f28_D4e-211684169MEF2C
6c9l_A3e-211684169Myocyte-specific enhancer factor 2B
6c9l_B3e-211684169Myocyte-specific enhancer factor 2B
6c9l_C3e-211684169Myocyte-specific enhancer factor 2B
6c9l_D3e-211684169Myocyte-specific enhancer factor 2B
6c9l_E3e-211684169Myocyte-specific enhancer factor 2B
6c9l_F3e-211684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3828330.0AY382833.1 Glycine max MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028202773.11e-170floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_028202774.11e-170floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ408721e-129AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A0B2PHA40.0A0A0B2PHA4_GLYSO; Floral homeotic protein AGAMOUS
STRINGGLYMA15G09500.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-107MIKC_MADS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]