PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06947.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 902aa    MW: 100159 Da    PI: 6.7001
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06947.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.3e-23127232198
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE....E-SSS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk....ldgrs 88 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F     l  ++
  KHN06947.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIwqvtL-LNE 222
                 99*****************************8544444..48***********************************************844322.235 PP

                 EE..EEEEE- CS
          B3  89 efelvvkvfr 98 
                 + +l+++++r
  KHN06947.1 223 KNQLLLGIRR 232
                 5556666666 PP
2Auxin_resp120.31.4e-39258341183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  KHN06947.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 341
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-46112261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-41119247IPR015300DNA-binding pseudobarrel domain
CDDcd100177.54E-22126232No hitNo description
PfamPF023621.3E-21127233IPR003340B3 DNA binding domain
SMARTSM010192.8E-23127234IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717127234IPR003340B3 DNA binding domain
PfamPF065079.9E-35258341IPR010525Auxin response factor
PfamPF023093.4E-6767854IPR033389AUX/IAA domain
PROSITE profilePS5174521.845769853IPR000270PB1 domain
SuperFamilySSF542779.81E-6769844No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MRLSSADFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE  60
VDAHIPNYPS LPPQLICQLH NMTMHADVET DEVYAQMTLQ PLNPQEQNEA YLPAELGTAS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWQVTLL NEKNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HLGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGIGDLDPV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSSFPLRLKR PWPPGLPSFH GMKDDDFGLN SPLLWLRDTD RGLQSLNFQG  420
IGVNPWMQPR FDPTVLNMQT DMYQAAAAAA VQDMRSLDPS KQLSASLLQF QQPQNFPNRT  480
AALMQAQMLQ KSQPQQIFGN NQENQHSPQS QPQTQAHLQQ HLQHQHSFNS QHHHHQQQQQ  540
QQQVVDNQQI SSAVSTMSQL FSAPQPQSPP MQAISSLCQN FSNSNGNSVT TIVSPLHSIL  600
GSFPQDETSH LLNLPRTSSW IPVQNSSGWP SKRVAVDPLL SSGASHCVLP QVDQLGQPHS  660
TMSLNAITLP PFPGRESSID QEGSNDPQNH LLFGVNIDPS SLLMPNGMSS LKGVSGNNNS  720
STLPYQSSNY LNTTTGTDSS LNHGMTPNIG DSGFLHCPED AGQGNPLNKT FVKVYKSGSF  780
GRSLDITKFS SYHELRGELA RMFGLEGELE DPVRSGWQLV FVDRENDVLL LGDGPWPEFV  840
NSVWCIKILS PQEVQQMGNN GLELLNSVPN QRLSNGICDD YVSRQDPRNL STGITTVGSL  900
DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591336243388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06947.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546066.10.0auxin response factor 6 isoform X2
RefseqXP_028203897.10.0auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0B2PHC30.0A0A0B2PHC3_GLYSO; Auxin response factor
STRINGGLYMA15G09750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]