PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07151.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 254aa    MW: 28912.9 Da    PI: 8.1392
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07151.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-1322107899
                 -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   +l++g+l lpk+f++++g +   s  + l+ ++g +W++    +k +g+++++kGWke++    L+ g  ++F+++g+s f   v++f++
  KHN07151.1  22 RTSLAHGILKLPKDFTTKYGDS--MSNLVFLNPPDGIEWKICW--TKLDGKIWFEKGWKEYATYYSLDHGHLLLFQYQGTSHF--DVHIFDN 107
                 56788999***********877..566788888*******999..*********************************99999..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-2013108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-1914108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-1215106No hitNo description
PROSITE profilePS5086311.81515108IPR003340B3 DNA binding domain
SMARTSM010191.1E-1016108IPR003340B3 DNA binding domain
PfamPF023621.6E-1023107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-5210254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-5212253IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MTSSHNKHPL PTAVHFFKII LRTSLAHGIL KLPKDFTTKY GDSMSNLVFL NPPDGIEWKI  60
CWTKLDGKIW FEKGWKEYAT YYSLDHGHLL LFQYQGTSHF DVHIFDNSAV EVDYPSSPGT  120
RDGKERHVEI SDDSVEILDA QFSCQKTRVK STVPSPQPSK EMKFGPTTNV ERSPRVNLHQ  180
HVQTGKEGKG IFNTECPKVE QLTSTTLKKA TTFRLVMKPS FINGEYLEIP PQFAEQHLQK  240
THAVVLLENL DGKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028196683.11e-168B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A0B2PCV00.0A0A0B2PCV0_GLYSO; B3 domain-containing transcription factor VRN1
STRINGGLYMA13G05926.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-25B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]