PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07363.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 231aa    MW: 26714.2 Da    PI: 8.8961
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07363.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.16.7e-34211122102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y +++d+++++++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+ +++         weF ++ Fkkg++ell++i+
    KHN07363.1  21 FLLKTYMLVDDPATDDVVSWNSEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKIATSR---------WEFFNDRFKKGERELLHEIR 108
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    KHN07363.1 109 RRKA 112
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.13E-3217110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5017110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-3518110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.0E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3021110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEGTSEKGLW ECGRKCTPPP FLLKTYMLVD DPATDDVVSW NSEGTAFVVW QPAEFARDLL  60
PTLFKHSNFS SFVRQLNTYG FRKIATSRWE FFNDRFKKGE RELLHEIRRR KAWTSKQQPK  120
APNQATLQDS DEDQRSSSIS SSSGYTTLVD ENKRLKKENG VLNSELTSMK RKCKELLDLV  180
AKYSSHAKEE KEDERPMLFG VRLDVQGERE MKRHRAEMSE SASIMLSQSC K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-201911018120Heat shock factor protein 1
5d5u_B3e-201911027129Heat shock factor protein 1
5d5v_B3e-201911027129Heat shock factor protein 1
5d5v_D3e-201911027129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0987910.0BT098791.1 Soybean clone JCVI-FLGm-16B16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340353.11e-173heat stress transcription factor 6
RefseqXP_028225285.11e-173heat stress transcription factor B-3-like
SwissprotO222301e-67HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A445LBQ31e-172A0A445LBQ3_GLYSO; Heat stress transcription factor B-3
TrEMBLI1JNB91e-172I1JNB9_SOYBN; Uncharacterized protein
STRINGGLYMA03G29190.11e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-66heat shock transcription factor B3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]