PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07394.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 358aa    MW: 40313.7 Da    PI: 6.7302
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07394.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001280302123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk F  + + ++H +++
  KHN07394.1 280 FMCRKCGKAFAVRGDWRTHEKNC 302
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.58196218IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.3E-6196215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64196223IPR007087Zinc finger, C2H2
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
SuperFamilySSF576671.68E-6262300No hitNo description
Gene3DG3DSA:3.30.160.609.5E-6267300IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549280300IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808280300IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MADPYSNFFS SSSPLFRFNH NQYFPSSNPS PQHHNHNFIN HTKTNDTTTT TAFFHYHQHQ  60
TTTAFSSFPP SPPLREELPL LKLSPTKQDE EEVEDLVSNC TGGAMDVEER IHLKEELEDD  120
EDGSTSVTVA LHIGLPSPSA AEMASVLSSS SHEITDKDQH GDHGAAEDSS SAGFRLNKGQ  180
YWIPTPSQIL IGPTQFSCPV CCKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTGMLRL  240
PCYCCAPGCR NNIDHPRAKP LKDFRTLQTH YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK  300
NCGKLWYCIC GSDFKHKRSL KDHIKAFGSG HAAYGIDGFE EEDEPASEVE QDNDDSTQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07394.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0964620.0BT096462.1 Soybean clone JCVI-FLGm-20D6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521192.10.0zinc finger protein WIP2
RefseqXP_028225335.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-147ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0R0KIS40.0A0A0R0KIS4_SOYBN; Uncharacterized protein
TrEMBLA0A445LBY50.0A0A445LBY5_GLYSO; Zinc finger protein WIP2
STRINGGLYMA03G29610.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-142C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]