PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07419.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 344aa    MW: 38584.2 Da    PI: 8.3004
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07419.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.8e-32170224155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r+rWt++LHe+Fve+v++LGG+e+AtPk+il++m+ +gLt+ hvkSHLQkYR+
  KHN07419.1 170 KTRIRWTKDLHEKFVECVNRLGGAEQATPKAILKMMNTDGLTIFHVKSHLQKYRI 224
                 68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.77167227IPR017930Myb domain
SuperFamilySSF466891.54E-17168224IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-28168225IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23170225IPR006447Myb domain, plants
PfamPF002491.1E-9174223IPR001005SANT/Myb domain
PfamPF143798.2E-20254301IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSRFESPASA FYAAENCMEF AEYDCQVGIH SLSSQLCKIN DLEFPLYQSP RENLFLDSAN  60
QSETNFDLSN TLQSIVKSQL NSANQCSRSP EKSNKISCGN FHSTKFLPVE QQKLFIDGLI  120
SGSSFPNKGN QDHMLRFSSQ IERLSPTLSA GSVSTIGNSA SNVAAVVSSK TRIRWTKDLH  180
EKFVECVNRL GGAEQATPKA ILKMMNTDGL TIFHVKSHLQ KYRIAKFIPE PSHGKSDKRT  240
HTKDVHHLDV KTGIQIREAL KLQLDAQRCL HEQLEIQRKL QLRIEEQGRQ LKKMFDQQQK  300
TSNDVSNTQN STIEETSISH KDGENASEGA NNNSFFPSKT SPSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-23170227259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-23170227259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-23170227259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-23170227259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-23170227259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-23170227259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-23170227259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-23170227259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07419.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN2015260.0JN201526.1 Glycine max PHR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237115.20.0MYB-CC domain-containing transcription factor PHR8 isoform 2
RefseqXP_028225380.10.0uncharacterized protein LOC114406770 isoform X2
TrEMBLA0A445LBV20.0A0A445LBV2_GLYSO; Myb family transcription factor PHL5
TrEMBLI1JNJ80.0I1JNJ8_SOYBN; Uncharacterized protein
STRINGGLYMA03G29940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.16e-68G2-like family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]