PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07530.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 369aa    MW: 41827 Da    PI: 7.7519
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07530.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like795.9e-25173226155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kprl+W  eL +rFv+a+ +L G +kA Pk+ile+m+v+gLt ehv+SHLQkYR+
  KHN07530.1 173 KPRLVWQGELQQRFVRAIMHL-GLDKAQPKRILEVMNVPGLTKEHVASHLQKYRV 226
                 79*******************.********************************7 PP
2Response_reg616.4e-21211291106
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEE.STTT.HHHHHHHHHT CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvt.ahge.eedalealka 92 
                   vl vdD+++v+  +++++ + +y +v +++d+++al+ ++ek+   +D+il+ + m +mdG+e+lk+ ++e  ++pii+++ ++++  + + ea+k 
    KHN07530.1  21 VLAVDDDHNVLVFIKRMCIQWNY-RVIAFSDAPSALNFVREKKgcnIDVILTEVHMANMDGYEFLKHATKEI-NVPIIMMShDNATtTSALMEAVKH 115
                   799********************.999****************************************98877.9*******76666789999***** PP

                   TESEEEESS--HHH CS
  Response_reg  93 GakdflsKpfdpee 106
                   Ga df  Kp ++++
    KHN07530.1 116 GACDFWIKPLNEKQ 129
                   *********99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.98E-2617144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.4E-2618162No hitNo description
SMARTSM004482.0E-1419134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.71420138IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-1621130IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.94E-1822131No hitNo description
Gene3DG3DSA:1.10.10.601.8E-26171230IPR009057Homeodomain-like
SuperFamilySSF466893.23E-16171230IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-22173226IPR006447Myb domain, plants
PfamPF002491.3E-5176225IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MATYPTKEKV NFHPFPEGLT VLAVDDDHNV LVFIKRMCIQ WNYRVIAFSD APSALNFVRE  60
KKGCNIDVIL TEVHMANMDG YEFLKHATKE INVPIIMMSH DNATTTSALM EAVKHGACDF  120
WIKPLNEKQF RILWTQVARK MWNEKMLAKT DDSSVHGTRV MNTEKNSSTP PKKPRLVWQG  180
ELQQRFVRAI MHLGLDKAQP KRILEVMNVP GLTKEHVASH LQKYRVNLKK SNKMITAHQE  240
NEMQMQLPNN IESRGMVGAS SIFPYAVLHP EEQWPNYYHL EEQQGVPYIA KYPSNMINNA  300
KNFAQPIMTV DDAPICGVLP QSNTVTANNA LMHPDMYVAA AASSEAANSD ALSNSFNELS  360
AILHGNYNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17169230162ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627050.10.0two-component response regulator ARR2
TrEMBLA0A0B2PE030.0A0A0B2PE03_GLYSO; Two-component response regulator ARR2
STRINGGLYMA19G06550.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3666822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-53response regulator 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]