PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07767.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 196aa    MW: 22528.6 Da    PI: 9.1762
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07767.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.91.2e-36111101100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCaaCk++r+kC+++C+l pyfp++++++f +vhk+FG+sn++kl+k++++e+r+++++sl++eA++r+rdP++G +g ++k+ ++++++  el++ k+
  KHN07767.1  11 ACAACKHQRKKCSENCILGPYFPSNKNQEFHAVHKVFGVSNITKLVKNAKTEDRRKVVDSLIWEACCRQRDPIQGPYGEYTKVYNEYKKVLDELKRFKS 109
                 7******************************************************************************************99998776 PP

      DUF260 100 e 100
                 +
  KHN07767.1 110 Q 110
                 5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.63110111IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-3511107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004088Molecular Functioncarbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MQRNNSGMHP ACAACKHQRK KCSENCILGP YFPSNKNQEF HAVHKVFGVS NITKLVKNAK  60
TEDRRKVVDS LIWEACCRQR DPIQGPYGEY TKVYNEYKKV LDELKRFKSQ NQLLQIPSLG  120
LKSVQGLITC SETKGEHKAT IDSALDYLHG KKNGIIDSDN YNTYCSNYLQ EFQNMRPEVV  180
IPFRQHSQSY YTTGIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2041044104LOB family transfactor Ramosa2.1
5ly0_B3e-2041044104LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07767.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984579.11e-146protein ASYMMETRIC LEAVES 2
SwissprotQ9LNB91e-36LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A0B2PJN51e-146A0A0B2PJN5_GLYSO; LOB domain-containing protein 2
TrEMBLK7KXY21e-146K7KXY2_SOYBN; Uncharacterized protein
STRINGGLYMA06G43811.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.16e-39LOB domain-containing protein 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]