PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN07851.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 219aa MW: 23536.9 Da PI: 8.0609

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN07851.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	84.8	1.3e-26	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lr++C +dC+++p++ p++q++++ +++k++G++ +++l++++p+++ +++++sl+yeA+ r+ +P G+vg+++++++ +q+ ++ KHN07851.1 4 SCNGCRILRKGCGEDCAIRPCLewintPQAQANATLFLAKFYGRAGLVNLIDSAPQHNGPAVFKSLLYEACGRIANPTFGSVGLFWTGEWAQCQALFDA 102 6*********************************************************************************************99888 PP DUF260 95 allkee 100 +l++++ KHN07851.1 103 VLAGSQ 108 888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.283	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.4E-22	4	98	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MKLSCNGCRI LRKGCGEDCA IRPCLEWINT PQAQANATLF LAKFYGRAGL VNLIDSAPQH 60 NGPAVFKSLL YEACGRIANP TFGSVGLFWT GEWAQCQALF DAVLAGSQIK VVGASDSQGI 120 ATHGDEHVAQ ILGIRHVSKD AEMDHVKGRA KKIKRSRTVI KPKPQVSSID SAAMLKLTWS 180 REPGGSEGDS EETVEAMLVS QNKPSRNGGV EMDLDLTLG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN07851.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028247178.1	1e-161	LOB domain-containing protein 41-like
TrEMBL	A0A0B2PEM5	1e-162	A0A0B2PEM5_GLYSO; LOB domain-containing protein 41
STRING	GLYMA08G31143.1	1e-160	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14785	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-63	LOB domain-containing protein 41

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]