PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07993.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 234aa    MW: 25970.6 Da    PI: 7.7381
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07993.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.85.4e-283993459
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                  +Y+eClkNhA+s+G h +DGC Ef+p  geegt +alkC  C+CHRnFHR+e+++
   KHN07993.1 39 GKYQECLKNHAVSIGKHIIDGCIEFLPG-GEEGTLEALKCVVCNCHRNFHRKETHD 93
                 58*************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-184091IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.3E-264090IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.9E-274091IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.4824190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.82E-20157232IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-32161233IPR009057Homeodomain-like
TIGRFAMsTIGR015656.9E-27171227IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MPLNHDEQEP VVEVIPMAVP MAVPVAPPTN IVAQNSGKGK YQECLKNHAV SIGKHIIDGC  60
IEFLPGGEEG TLEALKCVVC NCHRNFHRKE THDTYSVPFH HHHPPLPPPV PFAAYYHTPP  120
GYPHMTGHQR AMLAHPSLSG GGGPQPPLED LEDSDPTSGA TTHDGSGSSS KKRFRTKFTQ  180
HQKDKMLVFA EKLGWRMQKN DDSVVQEFCS EIGVQRHVLK VWMHNNKHTL GKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-251722291875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07993.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354070.0AC235407.1 Glycine max strain Williams 82 clone GM_WBb0125K21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028242397.11e-176zinc-finger homeodomain protein 2-like
SwissprotQ6YXH52e-63ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
SwissprotQ9SB611e-63ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A0B2PK631e-174A0A0B2PK63_GLYSO; ZF-HD homeobox protein
TrEMBLA0A445JLD21e-173A0A445JLD2_GLYSO; Zinc-finger homeodomain protein 1
STRINGGLYMA08G38500.11e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-61homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]