PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN08270.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

YABBY

Protein Properties

Length: 215aa MW: 24177.3 Da PI: 6.0808

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN08270.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	193.8	8e-60	6	163	2	166
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++f+ +eq+Cy+qC+fC+til+vsvP +sl++vvtvrCGhCtsl+svn++kas +lla+ shl+ + + ++ +k+ +++ s+++ +++++++v KHN08270.1 6 HLFDLPEQICYIQCGFCSTILMVSVPCSSLSMVVTVRCGHCTSLFSVNMSKASfipfHLLASLSHLEPKESSPEADANKTLNSHSASMMTYSDCEEEDV 104 7899*********************************************998898999999997766555555555555555444444444443333 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 +++ + v++PPekrqr Psayn+fik ei+r+ka+nPd++h+eafs+aaknWa fP+ KHN08270.1 105 IP----------MSH-HVVNKPPEKRQRTPSAYNCFIKKEIKRLKAENPDMAHKEAFSTAAKNWANFPQT 163 22..........222.3479**********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.9E-61	11	164	IPR006780	YABBY protein
SuperFamily	SSF47095	5.24E-9	109	163	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.0E-6	114	164	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSTLNHLFDL PEQICYIQCG FCSTILMVSV PCSSLSMVVT VRCGHCTSLF SVNMSKASFI 60 PFHLLASLSH LEPKESSPEA DANKTLNSHS ASMMTYSDCE EEDVIPMSHH VVNKPPEKRQ 120 RTPSAYNCFI KKEIKRLKAE NPDMAHKEAF STAAKNWANF PQTQWCRGDE ESCSQTDQLV 180 NSQVDPPDAE VNEEGQGFRG RKVPRNSILE RTQFE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN08270.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	2e-52	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028228388.1	1e-162	axial regulator YABBY 4-like isoform X4
Swissprot	Q9LDT3	2e-68	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A445K7A3	1e-144	A0A445K7A3_GLYSO; Axial regulator YABBY 4 isoform A
STRING	GLYMA04G10125.1	1e-139	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	9e-71	YABBY family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]