PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08332.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 409aa    MW: 44372.6 Da    PI: 4.5679
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08332.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.5e-06444539
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                +C+ +++++   +C+++  +lC +C  + H+       H++
  KHN08332.1  4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                7*****************************65677777765 PP
2zf-B_box21.16.5e-074688440
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                  C++++++++   C + +  lC++C   +H g       H+++
  KHN08332.1 46 LLCERCNSQPAFVRCVEEKISLCQNCDWLGH-GtstssstHKRQ 88
                57*****************************.547778888765 PP
3CCT64.24e-22352395144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R +a++RYkeK+ktR F+Kk+rY+sRKa+A+ R RvKGrFvk+ 
  KHN08332.1 352 RSNAVMRYKEKKKTRMFDKKVRYASRKARADVRRRVKGRFVKAG 395
                 899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.542147IPR000315B-box-type zinc finger
CDDcd000211.05E-6447No hitNo description
SMARTSM003365.7E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.7174390IPR000315B-box-type zinc finger
CDDcd000212.86E-44790No hitNo description
SMARTSM003361.64890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.279352394IPR010402CCT domain
PfamPF062033.3E-17352394IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC  60
VEEKISLCQN CDWLGHGTST SSSTHKRQAI NCYSGCPSAA ELSSIWSFVL EIAAISESTC  120
EQELGLMSIN ENKCAGVPPE DQNVSGSDEV TDLPALNKSL VGASLMPESS SEPCILDQPA  180
GPTNECLPKL YCPATKCPAL SEDDNLYDDF NMDEVDLDLE NYEELFGMAL SHSEELFENG  240
GIDSLFGTKG MSAGDSNCQE AIAAEGSSVG QVNAMQPACS NAASADSILS TKTEPILCFT  300
GRQTQSNLSF SGVTGESSAG DYQDCGASSM LLMGEPPWFA PCPENSLQSA NRSNAVMRYK  360
EKKKTRMFDK KVRYASRKAR ADVRRRVKGR FVKAGDVYDY DPLSTTRSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08332.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0979890.0BT097989.1 Soybean clone JCVI-FLGm-22F8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221146.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_028221147.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-155COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0B2PL850.0A0A0B2PL85_GLYSO; Zinc finger protein CONSTANS-LIKE 9
STRINGGLYMA20G07051.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-142CONSTANS-like 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]