PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08501.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 903aa    MW: 102682 Da    PI: 4.0978
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08501.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-08417436525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 +C+ffa+ G+C +G++C+F H
  KHN08501.1 417 ICDFFAK-GWCIRGSSCSFLH 436
                 7******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.32E-6412436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615412439IPR000571Zinc finger, CCCH-type
SMARTSM003560.002413438IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-6417436IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MSLPDSPVAN DDEIDPSLDE EEEEEEEEIE EEEEEEEEVE EEEVEGEEVE EDEVDEEEEE  60
EEEVVEEEVE EEEEEEELEE IEVEEEEEES EQRAEEMEEE EEEEVEVEEE GEEEEVEEEE  120
EGEEEEVEEE EEEEEVEVEE EEEEEEEVEV EEKEEKEDEE QQQQQQETVE EKKEERQQQQ  180
EAEEAVKEQQ KKQQQEAMEE KEEDKLAVPG SPLDADKDRQ DSSQHMEFEG QDKILGPVSS  240
VAENPEVMPP SSMHCLEEND AMLKKSEIPT LEKDELPLKY EFSSHPKSRE NLTSVEDYRS  300
QVFDVEVENA GSLLQNETFG GYSEPGCNSK ANLCGDNNID SRARATKSSS DTVQDMVIGP  360
LPRDCLVEDS NGGQNSRIKI MQSEIESRDN VKQMTSRTRS LSPGAEIKDG NKRPRIICDF  420
FAKGWCIRGS SCSFLHIKDT GANIDQEAEA DLVTTHQKRQ LKVEEGVREN VERSRMNQQE  480
TTPSWHPSQE KQKFPLRDNL VPENRFPFSA SDNYFSSNLS LTSTRADGMA TLRNQHMYKG  540
YTSTLLSHSP NSSLVSQFPA SSMPLSQQIL AQSGRSLSFS NVDSKKFLNT DKEYLTSKST  600
FSGSGSGSGR EDFSLVNLSR VPSYPAGYKS KICSYDWEPS VPFRPSFFIT SMNVSSPGDL  660
YDPLRDSIEI PNIGDGSLKA SLLIHGSNIQ ASSQVRTYGD SAVVGKHMAN LNDDKSSVSS  720
HNKFCENEPN KNCLPREKDC LPPETEITSG TYVHYQGKMG MGQHTFEVAD NKKKERDLTE  780
CDARCHGEGS GRKKKRVDRD KKNHEMDVDF QMDGSMQKES KALKFFRAVL IDHVKELLKP  840
AWHEGRLSKD THIMIVKKSV DKVVNTLEPH QIPTIDTAKQ YVSSSQVKIA KLVNGYVNKY  900
GKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08501.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028188697.10.0stress response protein NST1-like
TrEMBLA0A445I9000.0A0A445I900_GLYSO; Protein FRIGIDA-ESSENTIAL 1 isoform A
TrEMBLA0A445I9770.0A0A445I977_GLYSO; Protein FRIGIDA-ESSENTIAL 1 isoform B
STRINGGLYMA13G31033.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-41C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]