PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08632.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 102aa    MW: 11899.9 Da    PI: 10.0394
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08632.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS51.12.6e-163100277374
        GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +++e ri +E   l++ i+n+va+e  er+ r+ +   Wr+ + +  + + ++se+   qa+l+ +k++ ++  +v+ + ++l+ gWk+ p+ s+S+W+
  KHN08632.1   3 QDHECRIRIEGI-LSEGIRNIVAMEDGERKVRNVKIDVWRRFFARYRMVETTFSESSLYQANLVAKKFAcGNFCTVDRNGKCLIVGWKGTPIHSISVWK 100
                 577899999998.9*******************************************************888889999999*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035148.9E-143100IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MKQDHECRIR IEGILSEGIR NIVAMEDGER KVRNVKIDVW RRFFARYRMV ETTFSESSLY  60
QANLVAKKFA CGNFCTVDRN GKCLIVGWKG TPIHSISVWK FL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-104AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413104.13e-61PREDICTED: DELLA protein RGL1-like
RefseqXP_020225103.12e-61scarecrow-like protein 18
TrEMBLA0A0B2PM297e-70A0A0B2PM29_GLYSO; DELLA protein RGL2
TrEMBLA0A0R0KPV61e-67A0A0R0KPV6_SOYBN; Uncharacterized protein
TrEMBLA0A445LI554e-67A0A445LI55_GLYSO; DELLA protein RGL2
STRINGGLYMA02G01530.23e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-09RGA-like 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]